The devs haven't said anything about that yet, so we don't know. Since we don't have ANY true PVP-based missions, MA or otherwise, I doubt the structures are in place yet that they could then copy into the MA.
It would be pretty cool, mind you. Just don't expect it to happen tomorrow.
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I am not I thought it would be a cool idea.
Are we going to be able to in the future make our own PVP missions?