Ouroboros Initial Contact Dialogue?
This appears to be an unavoidable hiccup caused by the new branching dialogue system. The best way, currently, to run these missions if you've out-leveled them is to:
1.) Talk to the contact as normal, complete all dialog.
2.) Run the flashback in its entirety.
3.) After the flashback concludes, speak to the contact again as normal.
Annoying, but you'll get the whole story chronologically that way.
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I just did the 4 new I17 contacts through Ouro on two of my 50s. On both sides, I would use the crystal, and teleport to the contact. If I did not actually click on the contact, and went about doing my missions, the first time I returned to the contact and clicked on him/her, it would give me the initial contact dialog before debriefing/talking to me. I'm not sure if this is just an Ouro thing, or just these 4. It was cool in that I got to see the dialogue that I had missed because I selected the mission through Ouroborous, but it was annoying in that I was supposed to be getting something else.